
Align brain microscopy to an atlas, review and export ROIs
AtlasAlign is an open-source Fiji/ImageJ2 plugin for mouse brain atlas alignment and ROI export. Beta.3 adds multichannel and composite viewing, registration pinned to C/Z/T, selected-plane exports, and saved review sessions. Refine alignment, edit anatomical ROIs, and export crops and masks in original image coordinates. Resume individual or batch reviews. Source images stay read-only; researchers review and accept the anatomy. Demo frames show the earlier interface.
AtlasAlign is an open-source Fiji/ImageJ2 plugin designed for aligning mouse brain microscopy images to an atlas and exporting regions of interest (ROIs). The latest Beta.3 version includes features such as multichannel viewing, registration options, and the ability to resume review sessions while keeping source images read-only.
AtlasAlign scores a signal of 49 for an unusual brain microscopy tool.
signal 49 out of 100, latest Beta.3 version includes multichannel viewing and registration options.
Gaps in our data, not findings about the product. Their weight is redistributed across the 5 we did measure.
A source that found nothing is a measurement. A source that has not run is a gap. Neither means the launch lacks the thing.